DNA Damage Atlas

GSM2068758-NHEK_bless_seq_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3182252, SRR3182253, SRR3182254, SRR3182255, SRR3182256, SRR3182257, SRR3182258, SRR3182259, SRR3182260


Source Project ID:   

GSE78172

Cell Type:   

NHEK


Organism:   

Homo sapiens


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 500


Technique:   

BLESS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.818236


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random11811611849711839871.2246-
chr315463160915463193115463166132.0749+
chr9_gl000199_random13926213964213937531.4426+
chr9_gl000199_random11360611411311397323.167-
chrX34267168342674813426719120.7041+
chr1062817395628177106281739520.5726+
rDNA13304147931363818.7687+
chr1146420604642492464225117.8135+
chr883420640834209428342064017.4348+
rDNA41186065716.6881-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random118116118497118398156.703-
chr9_gl000199_random11360611411311397374.175-
chr9_gl000199_random13926213964213937534.2301+
chr315463160915463193115463166129.5591+
chr645146559451468854514667622.7396+
chr1146421384642487464225119.5113+
chr9_gl000199_random11030211056611032218.8084+
chrUn_gl00021464865655066513817.5888-
chrUn_gl00021464006648126444117.0587-
chrX34267168342674493426719116.7697+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab