DNA Damage Atlas


GSM2107919-Trdd2_3P_WT_rep2




Basic Information

Manual

Sample ID:   

SRR3331552


Source Project ID:   

GSE79892

Cell Type:   

OP9-DL1


Organism:   

Mus musculus


Treatment:   

IL-7 + Flt3-L


Treatment Dose:   

5ng/ml IL-7 + 5ng/ml Flt3-L


Genotype:   

WT


Harvested Time:   

14days


Targeted break:   

Trdd2


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr14539182215392083553919668218004-
chr1453908191539104955391000393475-
chr1453737245537377015373750080432-
chr1453783260537838835378368254902.8-
chr1453855627538560975385589641133.3-
chr1453511172535116635351145920874.9-
chr1453402921534031855340318019481.6-
chr1453299162532995365329952718067.5-
chr1453669287536698535366984617408.9-
chr1453664162536643805366437514202.6-
Download the Full Peak List



Motif Analysis

Manual





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