DNA Damage Atlas


GSM2107924-Trdd1_5P_WT_rep1




Basic Information

Manual

Sample ID:   

SRR3331557


Source Project ID:   

GSE79892

Cell Type:   

OP9-DL1


Organism:   

Mus musculus


Treatment:   

IL-7 + Flt3-L


Treatment Dose:   

5ng/ml IL-7 + 5ng/ml Flt3-L


Genotype:   

WT


Harvested Time:   

14days


Targeted break:   

Trdd1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr14539181395392202653919667166927+
chr14537372925373776053737501126269+
chr1453937989539386185393833845496.3-
chr1453783477537849345378368343146.8+
chr1453511254535117065351146326284.9+
chr1453855686538562895385589725613.6+
chr1453872098538725325387228221066.9+
chr1453568548535689705356874920074.7+
chr1453453338534535515345333915278.4+
chr1453689334536897515368953714988.8+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr14539187485392045653919667449188+
chr14537374975373771753737501235450+
chr14537836795378388953783683133264+
chr1453938124539385415393833882588.4-
chr1453568746535689535356874941012.1+
chr1453511377535116705351146338953.9+
chr1453669844536700575366984628041+
chr1453855895538562895385589724193.2+
chr1453689537536897415368953722732.8+
chr1453872100538724825387228220952.8+
Download the Full Merged Peak List



Motif Analysis

Manual





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