DNA Damage Atlas

GSM2107926-Trdd1_5P_WT_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3331559


Source Project ID:   

GSE79892

Cell Type:   

OP9-DL1


Organism:   

Mus musculus


Treatment:   

IL-7 + Flt3-L


Treatment Dose:   

5ng/ml IL-7 + 5ng/ml Flt3-L


Genotype:   

WT


Harvested Time:   

14days


Targeted break:   

Trdd1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr14539185535392134953919667293450+
chr14537372995373771753737501115896+
chr1453938124539385465393833880441.7-
chr1453568745535689665356874941612.1+
chr1453783477537840095378368331529.7+
chr1453669844536700575366984627865.5+
chr1453511376535116725351146326867.9+
chr1453872096538724865387210120091.3+
chr1453689536536897695368953716512.5+
chr1453664377536645915366437813812.8+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr14539187485392045653919667449188+
chr14537374975373771753737501235450+
chr14537836795378388953783683133264+
chr1453938124539385415393833882588.4-
chr1453568746535689535356874941012.1+
chr1453511377535116705351146338953.9+
chr1453669844536700575366984628041+
chr1453855895538562895385589724193.2+
chr1453689537536897415368953722732.8+
chr1453872100538724825387210120952.8+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab