DNA Damage Atlas

GSM2107928-Trdd1_5P_INT1-2KO_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3331561


Source Project ID:   

GSE79892

Cell Type:   

OP9-DL1


Organism:   

Mus musculus


Treatment:   

IL-7 + Flt3-L


Treatment Dose:   

5ng/ml IL-7 + 5ng/ml Flt3-L


Genotype:   

INT1-2KO


Harvested Time:   

14days


Targeted break:   

Trdd1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr14537834725378494153783683369737+
chr14537374945373780253737501231806+
chr14539185555392067353918756160782+
chr1453752991537532155375299527083.4+
chr1453938131539385425393833811589-
chr1453664378536645855366437811384+
chr1453669645536700535366984610445.4+
chr145357576953575977535757718918.76+
chr145351146153511669535114638436.66+
chr145356874753568953535687497788.41+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr14537835205378421453783683760260+
chr14539185555391903753918756456042+
chr14537374945373775653737501261732+
chr1453752994537532115375299521651.5+
chr1453938132539385425393833812910.5-
chr1453664378536645845366437810934+
chr1453669645536700535366984610598.7+
chr1453872099538723115387210110353.5+
chr145368953753689742536895379930.45+
chr145351146253511668535114638880.8+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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