DNA Damage Atlas


GSM2107928-Trdd1_5P_INT1-2KO_rep2




Basic Information

Manual

Sample ID:   

SRR3331561


Source Project ID:   

GSE79892

Cell Type:   

OP9-DL1


Organism:   

Mus musculus


Treatment:   

IL-7 + Flt3-L


Treatment Dose:   

5ng/ml IL-7 + 5ng/ml Flt3-L


Genotype:   

INT1-2KO


Harvested Time:   

14days


Targeted break:   

Trdd1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr14537834725378494153783683369737+
chr14537374945373780253737501231806+
chr14539185555392067353918756160782+
chr1453752991537532155375299527083.4+
chr1453938131539385425393833811589-
chr1453664378536645855366437811384+
chr1453669645536700535366984610445.4+
chr145357576953575977535757718918.76+
chr145351146153511669535114638436.66+
chr145356874753568953535687497788.41+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr14537835205378421453783683760260+
chr14539185555391903753918756456042+
chr14537374945373775653737501261732+
chr1453752994537532115375299521651.5+
chr1453938132539385425393833812910.5-
chr1453664378536645845366437810934+
chr1453669645536700535366984610598.7+
chr1453872099538723115387210110353.5+
chr145368953753689742536895379930.45+
chr145351146253511668535114638880.8+
Download the Full Merged Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab