DNA Damage Atlas


GSM2107932-Trdd1_3P_WT_rep3




Basic Information

Manual

Sample ID:   

SRR3331565


Source Project ID:   

GSE79892

Cell Type:   

OP9-DL1


Organism:   

Mus musculus


Treatment:   

IL-7 + Flt3-L


Treatment Dose:   

5ng/ml IL-7 + 5ng/ml Flt3-L


Genotype:   

WT


Harvested Time:   

14days


Targeted break:   

Trdd1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1453568537535687515356874813697.3-
chr1453737295537375015373750010985.8-
chr1453938125539385515393833910220+
chr145378347653783683537836824060.73-
chr145287103352871241528712381865.17-
chr145390557253905779539057781770.06-
chr145340297753403183534031801569.4-
chr145385567953856107538558961561.09-
chr145387189653872280538720991515.45-
chr145329932153299529532995241243.45-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1453938338539385505393833917280.5+
chr1453568542535687515356874813208-
chr1453737295537375015373750011344.1-
chr145340297753403183534031804201.55-
chr145378347653783683537836824034.5-
chr145287103452871240528712382379.02-
chr145387189653872280538720992135.39-
chr145329932553299529532995241990.96-
chr145385568753856107538558961612.57-
chr145351125953511462535114591411.33-
Download the Full Merged Peak List



Motif Analysis

Manual





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