DNA Damage Atlas

GSM2133282-BCR-ABL1_gH2AX_rep1_ChIPseq

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3441314


Source Project ID:   

GSE80682

Cell Type:   

Primary B cell precursors (BCR-ABL1 expressing)


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

NT


Genotype:   

53BP1-/-


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM2133289-BCR-ABL1_input_ChIPseq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA42000451994359946.6071/
chr1323738600237401992373939931.8392/
chr1323554800235561992355549922.8348/
chr1323763400237651992376429917.6041/
chr1321779000217815992178029916.684/
chr1323619600236227992362119913.7994/
chr157493040074937999749341998.90464/
chr39624720096247599962473998.88328/
chr39626860096270399962694998.69968/
chr121134142001134271991134206998.62626/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA42000451994359946.6071/
chr1323738600237401992373939931.8392/
chr1321779000217807992178029923.8474/
chr1323554800235561992355549922.8348/
chr1323763400237649992376429919.5181/
chr1323619800236227992362119914.6122/
chr1211341680011342719911342069910.212/
chr1574930400749369997493419910.1843/
chr39624720096247599962473998.88328/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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