DNA Damage Atlas


GSM2133285-BCR-ABL1_-D50_gH2AX_ChIPseq




Basic Information

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Sample ID:   

SRR3441317


Source Project ID:   

GSE80682

Cell Type:   

Primary B cell precursors (BCR-ABL1 expressing)


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Hydroxyurea


Treatment Time:   

2hrs


Treatment Dose:   

10mM


Genotype:   

53BP1-/-


Harvested Time:   

> 50days


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM2133289-BCR-ABL1_input_ChIPseq


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1323738600237401992373939915.2713/
chr132355500023556399235556999.68692/
chr132376360023765199237643997.84311/
chr132361960023622599236210997.01526/
chrX1699936001699949991699942996.34504/
chr133356760033569399335684996.33902/
chr132177900021781399217801995.92554/
chr148741580087417599874166995.33812/
chr103713600037138599371372994.93476/
chr99453640094538999945376994.80106/
Download the Full Peak List



Motif Analysis

Manual





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