DNA Damage Atlas

GSM2133288-C-MYC_gH2AX_rep2_ChIPseq

Basic Information Genome Browser Distribution Quantification Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3441321, SRR3441322


Source Project ID:   

GSE80682

Cell Type:   

Primary B cell precursors (C-MYC expressing)


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

NT


Genotype:   

53BP1-/-


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM2133290-C-MYC_input_ChIPseq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1323738600237401992373939914.4891/
chr1323555000235561992355559910.0024/
chr132376340023765199237642997.90013/
chr132177900021781399217801997.12536/
chr132361980023622799236212995.93352/
chr111160234001160245991160239995.29347/
chr109117060091172199911713995.23555/
chr132358500023585999235854995.02801/
chr64774840047748599477484994.89169/
chr18822540088293199882592994.13391/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1323738600237401992373939914.4891/
chr1323555000235561992355559910.0024/
chr132177900021780799217801999.41522/
chr132362080023622799236212998.47323/
chr132376340023765199237642997.90013/
chr39626860096270399962690995.32447/
chr111160234001160245991160239995.29347/
chr109117060091172199911713995.23555/
chr156198520061988399619862995.16088/
chr132358500023585999235854995.02801/
Download the Full Merged Peak List


Motif Analysis

Manual





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