DNA Damage Atlas


GSM2133293-CEBPAplusDOX_gH2AX_ChIPseq




Basic Information

Manual

Sample ID:   

SRR3441331


Source Project ID:   

GSE80682

Cell Type:   

Transformed B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Doxycycline + Dox-inducible CEBPA vector


Treatment Time:   

7days


Treatment Dose:   

1ug/mL


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM2133295-CEBPAplusDOX_input_ChIPseq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA41600451994339936.7609/
rDNA0267991339921.5461/
chr211810980011812959911811969920.4474/
chr1323738600237401992373939920.2545/
chr1323555000235561992355559915.3507/
chr1111602340011602479911602409912.7385/
chr1011727540011728239911727889912.4629/
chr613680340013680459913680399912.4616/
chr272978600729819997298029912.4262/
chr1060276200603129996029459911.7306/
Download the Full Peak List



Motif Analysis

Manual





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