DNA Damage Atlas

GSM2147429-Trdj1_5P_WT_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3486499


Source Project ID:   

GSE79892

Cell Type:   

OP9-DL1


Organism:   

Mus musculus


Treatment:   

IL-7 + Flt3-L


Treatment Dose:   

5ng/ml IL-7 + 5ng/ml Flt3-L


Genotype:   

WT


Harvested Time:   

14days


Targeted break:   

Trdj1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr14539185495391988353918771737320+
chr1453395088533952935339508810463.4+
chr145355997053560179535599714841.12+
chr145366984553670052536698464653.27+
chr145390979353910233539100134396.7+
chr145373749753737701537375014285.24+
chr145329384253294045532938423987.36+
chr145345333753453547534533393777.36+
chr145295700752957222529570073388.33+
chr145351146253511663535114633221.63+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr145339508853395291533950888914.69+
chr145355997053560171535599714172.8+
chr145390980853910217539100133949.57+
chr145373749753737701537375013706.2+
chr145366984653670047536698463650.39+
chr145329384253294045532938423105.2+
chr145295700752957210529570072992.32+
chr145351146253511663535114632225.38+
chr145286554352865746528655431847.68+
chr145285653052856731528565311512.92+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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