DNA Damage Atlas

GSM2147432-Trdj1_3P_WT_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3486502


Source Project ID:   

GSE79892

Cell Type:   

OP9-DL1


Organism:   

Mus musculus


Treatment:   

IL-7 + Flt3-L


Treatment Dose:   

5ng/ml IL-7 + 5ng/ml Flt3-L


Genotype:   

WT


Harvested Time:   

14days


Targeted break:   

Trdj1


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr14539097755391029553910012568788-
chr14539182365391896253918772418276-
chr14537372845373770153737500207522-
chr14534029705340318453403180196857-
chr14539383375393854853938339175531+
chr14535112545351146353511462104143-
chr14534857645348597653485973101841-
chr1453299306532995295329952496030.4-
chr1453669633536698485366984693072.2-
chr1453783473537836845378368292340.9-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr14539097755391029453910012610822-
chr14539182365391896253918772396299-
chr14537372845373750753737500383070-
chr14534029705340318453403180200922-
chr14539383375393854853938339170490+
chr14535112545351146353511462109016-
chr14532993185329952953299524103640-
chr14534857645348597553485973101844-
chr1453669633536698485366984686088.3-
chr1453783473537836835378368278089.1-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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