DNA Damage Atlas

GSM2150959-Trdd2_5P_CBE_KI_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3498889


Source Project ID:   

GSE81351

Cell Type:   

OP9-DL1


Organism:   

Mus musculus


Genotype:   

INT1-2KO


Targeted break:   

Trdd2-23RSS-SE bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr14539095335391049853910013160368+
chr14539173855392407453919667105692+
chr1453855688538561495385589733949.3+
chr1453511257535116905351146328258.2+
chr1453905763539060875390577923893+
chr1453783479537849965378368319194.5+
chr1453669645536701265366984617806.8+
chr1453453335534535415345333913975.8+
chr1453737298537385745373750113343.4+
chr1453937812539385415393833811760-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr14539095335391049853910013177080+
chr14539178715392356253919667119866+
chr1453669845536700565366984646906.1+
chr1453737300537377325373750144719.3+
chr1453855692538561495385589735316.9+
chr1453511257535116865351146326553+
chr1453938105539385395393833820942.5-
chr1453783479537849965378368318954.5+
chr1453568547535689565356874917170.4+
chr1453575765535759745357577114977.2+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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