DNA Damage Atlas

GSM2186606-NHF1_Cisplatin_Damage-seq_Rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3623533


Source Project ID:   

GSE82213

Cell Type:   

NHF1


Organism:   

Homo sapiens


Treatment:   

Cisplatin


Treatment Time:   

90min


Treatment Dose:   

200uM


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Damage-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022626064046332012.6479-
chrUn_gl00022665458140724711.1494+
chrUn_gl000226936410859997510.2862+
chrUn_gl0002282627328089274238.8228-
chrUn_gl0002431981122534218447.46151-
chrUn_gl0002141166901192401170575.44096+
chr9_gl000199_random6039361577607325.04285+
chr74585132445852608458518195.0181+
chr101302622131302632211302628714.60232-
chr12362601592362611282362607044.2556-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022626064041332013.3646-
chrUn_gl00022665458131724711.7847+
chrUn_gl000226936410859997511.3022+
chrUn_gl00022826286278422742310.1326-
chrUn_gl0002431981122496218447.79811-
chr74585140545852394458518196.68398+
chr101302623241302632021302628716.01103-
chrUn_gl0002141166901192401170575.74294+
chr9_gl000199_random9118292373915205.6574+
chr12362603882362611282362607045.5872-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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