DNA Damage Atlas


GSM2186611-GM12878_Cisplatin_Damage-seq_Rep1




Basic Information

Manual

Sample ID:   

SRR3623538


Source Project ID:   

GSE82213

Cell Type:   

GM12878


Organism:   

Homo sapiens


Treatment:   

Cisplatin


Treatment Time:   

90min


Treatment Dose:   

200uM


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Damage-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022624384043332013.5325-
chrUn_gl0002269504108711014010.803-
chrUn_gl00022652038138741310.4136-
chrUn_gl00022635948510.3014+
chrUn_gl00022826347279012742310.2442-
chr101302622801302632201302626526.52046+
chrUn_gl0002241562919627178245.67958-
chrUn_gl0002431985722311204504.91149+
chr74585145145852635458518194.7598+
chr71584600541584612671584604274.67992+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022665748138741313.0868-
chrUn_gl00022635948511.3303+
chrUn_gl0002269504108711014011.1548-
chrUn_gl0002282634727887274239.32475-
chr101302624651302632201302626527.11444+
chrUn_gl0002281167421190981183514.99958+
chr74585145145852607458518194.93997+
chr9_gl000199_random9118292365911824.69234+
chrUn_gl0002431985722267204504.50363+
chrUn_gl0002146392665242644374.49376-
Download the Full Merged Peak List



Motif Analysis

Manual





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