DNA Damage Atlas

GSM2186624-GM12878_untreated_Damage-seq_Rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3623551


Source Project ID:   

GSE82213

Cell Type:   

GM12878


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Damage-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA43299657151.883-
chrUn_gl00022010134810866810631293.7838+
chrUn_gl00022015266916060415871962.9353+
chrUn_gl00022826607280712668534.8558+
chrUn_gl00022668297825707930.9537-
chrUn_gl00022627833704320627.9915+
chrUn_gl00022654756192591726.318+
chrUn_gl0002269567108411000022.1132+
chr812232654122329451223269621.9196+
chrUn_gl00022416155193271689119.4388-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA43274657153.079-
chrUn_gl000220104101108518106312134.265+
chrUn_gl00022015708016060415871978.8343+
chrUn_gl00022631033536320656.1676+
chrUn_gl00022416685173271689141.5015-
chrUn_gl00022826622278452668540.091+
chrUn_gl00022668547825707932.6336-
chrUn_gl0002269902104241000032.027+
chrUn_gl00022654756179591725.437+
chr812232655122329021223269625.0433+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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