DNA Damage Atlas

GSM2186625-GM12878_cisplatin_XR-seq_Rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3623552


Source Project ID:   

GSE82213

Cell Type:   

GM12878


Organism:   

Homo sapiens


Treatment:   

Cisplatin


Treatment Time:   

3hrs


Treatment Dose:   

200uM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr163019291130200276301964234.19699/
chr81450558411450622971450582723.77118/
chr74720707472540247226793.51812/
chr193662971136634470366314143.46078/
chr116723004467237618672366353.46033/
chr199110549143629123793.43465/
chr203454038934544149345420063.4217/
chr164673391467758646749443.35138/
chr61570968461571025961570989123.33756/
chr162291832229798622967873.33566/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr163019291130200276301964234.19699/
chr81450558411450622971450582723.77118/
chr193662971136634470366314143.46078/
chr199110549143629123793.43465/
chr113327788833281738332789533.42231/
chr203454038934544149345420063.4217/
chr164673391467758646749443.35138/
chr61570968461571025961570989123.33756/
chr131118047511118083331118061163.25855/
chr53907243439076046390743903.2447/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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