DNA Damage Atlas

GSM2186627-GM12878_oxaliplatin_XR-seq_Rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR3623554


Source Project ID:   

GSE82213

Cell Type:   

GM12878


Organism:   

Homo sapiens


Treatment:   

Oxaliplatin


Treatment Time:   

3hrs


Treatment Dose:   

200uM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr163019343630200291301973753.75162/
chr113327775833281170332793423.29077/
chr17_gl000205_random1088011153831108023.28633/
chr81450558831450623951450582503.23925/
chr31501248281501308941501264773.22222/
chr177312355173129475731277423.13222/
chr101191327291191368801191345333.05795/
chr149597898495984652959829013.04064/
chr194638402446391309463889643.03436/
chr145035798850361758503598863.02755/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr17_gl000205_random1092641127431108025.36317/
chr31501249431501295991501264773.91875/
chr163019343630200153301973753.82869/
chr101034528711034562181034544883.75551/
chr177312396573128859731277423.64383/
chr113327782833280972332793423.56472/
chr61570970401571022761570992903.50043/
chr41500248315007621150054783.46677/
chr193318130933184488331831303.4086/
chr182654389265755826561163.34772/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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