Sample Detail

DNA Damage Atlas

GSM2186628-GM12878_oxaliplatin_XR-seq_Rep2

Basic Information

Manual

Sample ID:

SRR3623555

Source Project ID:

Cell Type:

GM12878

Organism:

Homo sapiens

Treatment:

Oxaliplatin

Treatment Time:

3hrs

Treatment Dose:

200uM

Layout:

SINGLE

Instrument model:

Illumina HiSeq 2500

Technique:

XR-seq

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Chromosome	Start	End	Summit	Intensity	Strand
chr17_gl000205_random	109264	112743	110922	5.21306	/
chr3	150124943	150129599	150128027	4.61393	/
chr19	1204875	1208491	1206436	4.51962	/
chr7	128576516	128583020	128578023	4.49396	/
chr16	30193195	30200153	30197358	4.44252	/
chr11	33277828	33280972	33279480	4.38078	/
chr6	157097040	157102276	157098949	4.36059	/
chr2	43450424	43456617	43451881	4.35544	/
chr2	178127570	178130816	178129425	4.18047	/
chr4	15002483	15007621	15005479	4.17749	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr17_gl000205_random	109264	112743	110922	5.21306	/
chr3	150124943	150129599	150128027	4.61393	/
chr16	30193436	30200153	30197358	4.59641	/
chr11	33277828	33280972	33279480	4.38078	/
chr6	157097040	157102276	157098949	4.36059	/
chr2	178127570	178130816	178129425	4.18047	/
chr4	15002483	15007621	15005479	4.17749	/
rDNA	2651	2980	2955	4.15828	/
chr14	50358127	50361550	50359613	4.08853	/
chr21	38737462	38741554	38739932	4.08423	/

Download the Full Merged Peak List

Visualization

Manual

Download the matrix file

Motif Analysis

Manual

Download

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