DNA Damage Atlas


GSM2227272-CSR_Im_XLF_PAXX_1_Rep3




Basic Information

Manual

Sample ID:   

SRR3745587


Source Project ID:   

GSE84102

Cell Type:   

CH12F3


Organism:   

Mus musculus


Treatment:   

IL-4 + αCD40 + TGFβ


Treatment Time:   

72hrs


Treatment Dose:   

20ng/mL IL-4 + 1mg/mL αCD40 + 1ng/mL TGFβ


Genotype:   

XLF-/-PAXX-/- clone 1


Targeted break:   

IgH Imu promoter


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1431613867316145173161403612499.6+
chr12067415420674356206741543079.14+
chr61130470581130473231130470581613.65+
chr62419638724196589241965881539.57-
chr161906330419063577190633041139.17+
chr12622821746228253462282375971.855-
chr15636133226361352463613322962.233+
chr12113482176113485218113482176958.437+
chr5281747052817490728174705769.786+
chr13505131265051332950513326765.994-
Download the Full Peak List



Motif Analysis

Manual





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