DNA Damage Atlas


GSM2227273-CSR_Im_XLF_PAXX_2_Rep1




Basic Information

Manual

Sample ID:   

SRR3745588


Source Project ID:   

GSE84102

Cell Type:   

CH12F3


Organism:   

Mus musculus


Treatment:   

IL-4 + αCD40 + TGFβ


Treatment Time:   

72hrs


Treatment Dose:   

20ng/mL IL-4 + 1mg/mL αCD40 + 1ng/mL TGFβ


Genotype:   

XLF-/-PAXX-/- clone 2


Targeted break:   

IgH Imu promoter


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1431613885316145253161403613580.6+
chr121132363451132382411132368931303.34-
chr12113482160113486752113482262946.382+
chr14671624246716262767162427839.523+
chr6113047080113047308113047080747.47+
chr12115158403115159239115158403662.53+
chr12110341294110341495110341495635.907-
chr16190633111906355919063311515.392+
chr12622821726228255462282334446.134+
chr11751707117517091275170711423.938+
Download the Full Peak List



Motif Analysis

Manual





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