DNA Damage Atlas


GSM2227276-CSR_Im_Ligase4_1_Rep1




Basic Information

Manual

Sample ID:   

SRR3745591


Source Project ID:   

GSE84102

Cell Type:   

CH12F3


Organism:   

Mus musculus


Treatment:   

IL-4 + αCD40 + TGFβ


Treatment Time:   

72hrs


Treatment Dose:   

20ng/mL IL-4 + 1mg/mL αCD40 + 1ng/mL TGFβ


Genotype:   

Ligase4-/- clone1


Targeted break:   

IgH Imu promoter


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX9950504599505252995050471263.05+
chr8123426311123430484123426584914.736+
chr12111428779111429047111429047878.009-
chr12113482085113487096113482270871.331+
chr12113233490113234691113233936849.01-
chr14547891485478951954789319775.193+
chr5237065272370773223706632629.22+
chr12554898065549382055489998592.728+
chr12115158363115159202115158403560.921+
chr3465056764650587946505679515.176+
Download the Full Peak List



Motif Analysis

Manual





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