DNA Damage Atlas

GSM2247728-Atm_wt

Basic Information Genome Browser Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR3939691


Source Project ID:   

GSE84689

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

129/Sv + C57BL/6 (mixed)


Genotype:   

Atm+/+


Harvested Time:   

age: adult (2-3 months)


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

SPO11-oligo


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6396390963964200639640531456.622-
chr1584187065842179458420257410.934-
chr2150588531150591291150589963348.919-
chr4481496454815207948150780327.283-
chr10111543973111547256111545876324.92-
chr17850427328504592085044468324.303-
chr5100536843100539415100538164312.226-
chr10129515961295427112952977308.752+
chr1337636403376629233765000304.412+
chr12844882438449096784489915303.723+
Download the Full Peak List


Visualization

Manual





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