DNA Damage Atlas

GSM2247731-Atm_null_2

Basic Information Genome Browser Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR3939694


Source Project ID:   

GSE84689

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

129/Sv + C57BL/6 (mixed)


Genotype:   

Atm-/-


Harvested Time:   

age: adult (2-3 months)


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

SPO11-oligo


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr13933278309332984493328868138.441-
chr13986814399868381598682647137.472+
chr4481495714815189048150780120.575-
chr1337636383376663133765000120.187+
chrX143482470143484029143483102111.893-
chrX648744586487862864876488111.485+
chr16975424149754513197543677110.086+
chr15137372691373960813738423106.757+
chr4608525360880206086712104.396+
chr14147382041474172814739970102.229+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL45638995671174410677252.878-
chr3457728674577529645773725219.87+
chr3290234802902368429023481214.897+
chr1337638093376581033765000209.118+
chrX143482822143483646143483102176.677-
chr9123798669123801805123800184163.392-
chr13933281049332979493328868155.637-
chr9119263376119265852119265119146.181+
chr12497320749751974974247144.098+
chrX648748876487780564876488143.79+
Download the Full Merged Peak List


Visualization

Manual





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