DNA Damage Atlas

GSM2247761-wt4_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3942949


Source Project ID:   

GSE84696

Organism:   

Saccharomyces cerevisiae


Genotype:   

WT


Harvested Time:   

4 hr in meiosis


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

SPO11-oligo


Others:   

epitope tag: Spo11-PrA ;artificial hotspot: NONE


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrVI9462296748959552294.34+
chrVIII5159965180235173472015.11-
chrIV8347128369108358621737.28+
chrII6419766435226427211700.56-
chrX7046807061077053111587.57+
chrXI5754805768315761401487.01-
chrXIV4263874280664271241473.55-
chrVII6088046109306101321402.33+
chrXIII7974017989957982201360.06+
chrII6617216634226624121312.14+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrVI9471596639959552882.66+
chrIV8350618368808358622197.03+
chrXIV4265364279984271242103.7-
chrVIII5160265180235173472063.15-
chrXIII7974027989757982201824.94+
chrII6420296434986427211699.79-
chrX2802582813072808611683.41+
chrXI5754965768065761401665.34-
chrVII6088836109096101321614.2+
chrX7047017061077053111589.76+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab