DNA Damage Atlas

GSM2252608-hop1_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR3953722


Source Project ID:   

GSE84859

Organism:   

Saccharomyces cerevisiae


Genotype:   

hop1 null


Harvested Time:   

4 hr in meiosis


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

SPO11-oligo


Others:   

epitope tag: Spo11-Flag


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrXVI4630444648734640636595.26-
chrXII8260588290808281933165.67-
chrIV1476088147769514767713060.03-
chrV4734614755244741322950.35-
chrIV8346338369218359362937.61-
chrXIV4264274280524270532612.25-
chrVIII1889551914561903462512.77+
chrVII8479338499268487522250.87-
chrXIII7974047989597982212186.9+
chrXII7036007054287043552146.23+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrXVI4630444648734640636277.28-
chrIV1476088147769514767713139.74-
chrIV8346338369218359363096.28-
chrXII8260618290808281932926.18-
chrV4734614755154741322742.03-
chrVIII1889551914561903462340.8+
chrXIV4264454280524270532325.76-
chrXIII7974047989597982212231.69+
chrX2904442921862913382195.22+
chrXII7036007054287043552113.69+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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