DNA Damage Atlas

GSM2263230-sgs4_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR4005238


Source Project ID:   

GSE85253

Organism:   

Saccharomyces cerevisiae


Strain:   

SKY5079


Genotype:   

sgs1-ΔC375


Harvested Time:   

meiotic time-point: 4 h


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

S1-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM116620153366243.33+
chrM1879822386193375495.46-
chrM2346029439236194947.63+
chrM3791968716619434226.37-
chrM3309137109344813896.59+
chrXII4595994607534605032708.22-
chrIV031281805.35+
chrVI4681497647141769.47+
chrIII08932191495.33+
chrXII1119411509112661363.27+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM116620153366266.77+
chrM1879822386193375992.59-
chrM2346029439236195070.29+
chrM3791968716619434262.49-
chrM3309137109344813963.65+
chrXII4595994607534605032445.32-
chrVI4682497647142404.89+
chrIV030981803.39+
chrIII08932191741.52+
chrM3014931284306031365.14-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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