DNA Damage Atlas


GSM2396662-HeLa_A_KCl_HincII




Basic Information

Manual

Sample ID:   

SRR5035906


Source Project ID:   

GSE90054

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

KCl


Treatment Time:   

2hrs


Treatment Dose:   

0.3 M


Genotype:   

WT


Targeted break:   

restriction digest: HincII


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6459211384592133945921338683.231-
chr16678973476789755367897350589.195+
chrX149362542149362742149362742239.329-
chr7104946036104946301104946101210.73+
chr2539398375394003753940037190.894-
chrX111175239111175683111175683174.543-
chr14762209947622120776220994144.464+
chr8120360467120360675120360467131.5+
chr5294704522947099029470452124.982+
chr8118922834118923094118923081124.925-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr6459211384592133845921338598.979-
chr16678973476789755367897350471.13+
chr5294704522947070729470452410.15+
chrX111175481111175683111175683331.494-
chr7104946101104946301104946101260.373+
rDNA136231432513680231.298+
chr2539398375394003753940037227.245-
chrUn_gl000220358593605936059217.382-
chrX768403177684058576840317202.569+
chr8118922872118923081118923081183.276-
Download the Full Merged Peak List



Motif Analysis

Manual





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