DNA Damage Atlas

GSM2396663-HeLa_A_KOH_HincII

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5035907


Source Project ID:   

GSE90054

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

KOH


Treatment Time:   

2hrs


Treatment Dose:   

0.3 M


Genotype:   

WT


Targeted break:   

restriction digest: HincII


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX111175481111175685111175683104.24-
chr1846873391468739304687392876.9329-
chr1667897149678975536789735075.5127+
chrUn_gl00023410655113161111870.1575-
chr645921013459216524592133864.7653-
chr1495886120958863539588635361.0782-
chr517127400171276891712740058.8651+
chr714977226614977264614977226658.5434+
chr171409427714097437140974049.4355-
chr2051701018517012185170101848.6642+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr7119064051119064053119064053681.913-
chr10129424605129424607129424605630.991+
chr15100424948100424950100424948590.966+
chr10111584013111584015111584015450.248-
chrX191787961917879819178796444.143+
chr6108641578108641580108641580427.206-
chr3817929788179298081792978409.713+
chr11246476282464763024647628400.066+
chr15985927599859276198592759377.141+
chr5171748896171748898171748896356.282+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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