DNA Damage Atlas

GSM2396665-HeLa_B_KOH_HincII

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5035909


Source Project ID:   

GSE90054

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

KOH


Treatment Time:   

2hrs


Treatment Dose:   

0.3 M


Genotype:   

WT


Targeted break:   

restriction digest: HincII


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr16678973446789755567897350111.395+
chrUn_gl00023410623113921111862.359-
chrUn_gl00022010344310443510344353.4226+
chr981577276815776028157760251.61-
chr529470247294708662947045249.7805+
chr1011293989811294024311293989848.2198+
chr517127400171277861712740046.0365+
chr521880209218807092188038245.2444+
chr645921101459215444592133844.9494-
chr1210327666210327699910327699944.5028-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr111279749551279749561279749551722.74+
chr2122370492122370494122370492733.226+
chr16831808228318082483180822731.653+
chr6356425523564255435642552668.735+
chr15100424948100424950100424948590.966+
chr17280435042804350628043504503.072+
chrX191787961917879819178796444.143+
chr6108641578108641580108641580427.206-
chr11246476282464763024647630400.066-
chr7807762580776278077627394.502-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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