DNA Damage Atlas

GSM2396667-HeLa_C_KOH_HincII

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5035911


Source Project ID:   

GSE90054

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

KOH


Treatment Time:   

2hrs


Treatment Dose:   

0.3 M


Genotype:   

WT


Targeted break:   

restriction digest: HincII


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr3588303415883058558830341137.346+
chr3587948795879516158794881107.61+
chr16205534742055370720553476102.21+
chrUn_gl00023410584113751111886.5693-
chr517127399171277031712740084.4149+
chr1289046626890468378904683682.8526-
chr221592542215930872159254480.858+
chr1667897344678976556789735078.2724+
chr1399931240999317439993124176.9862+
chr533252134332527083325248875.5086-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr111279749551279749561279749551722.74+
chr16831808228318082483180822731.653+
chr2192198600192198602192198600702.46+
chr7119064051119064053119064053681.913-
chr10129424605129424607129424605630.991+
chr15100424948100424950100424948590.966+
chr10459677644596776645967764511.589+
chr17280435042804350628043504503.072+
chr8543351465433514854335146480.05+
chrX191787961917879819178796444.143+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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