DNA Damage Atlas


GSM2396681-TK2-M1V-KOH




Basic Information

Manual

Sample ID:   

SRR5035925


Source Project ID:   

GSE90054

Cell Type:   

Patient-derived fibroblast cell


Organism:   

Homo sapiens


Treatment:   

KOH


Treatment Time:   

2hrs


Treatment Dose:   

0.3 M


Genotype:   

TK2 p.M1V (homozygous)


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220130927138007136536156.052+
chr16678973476789755367897350137.522+
chrUn_gl000216805158099480639122.587+
chrX111175482111175683111175683107.629-
chrUn_gl000220103465104434103823101.528+
rDNA12189207771371190.385+
chrUn_gl00022014745214821914796275.2138+
chr645921013459213534592133862.1127-
chr710494610110494634210494610155.5689+
chrUn_gl00021412867212962912906055.4371-
Download the Full Peak List



Motif Analysis

Manual





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