DNA Damage Atlas


GSM2396688-TK2-Q87_N100S-KCl_HincII




Basic Information

Manual

Sample ID:   

SRR5035932


Source Project ID:   

GSE90054

Cell Type:   

Patient-derived fibroblast cell


Organism:   

Homo sapiens


Treatment:   

KCl


Treatment Time:   

2hrs


Treatment Dose:   

0.3 M


Genotype:   

TK2 p.Q87*;p.N100S


Targeted break:   

restriction digest: HincII


Layout:   

PAIRED


Instrument model:   

NextSeq 500


Technique:   

HydEn-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6459211384592133945921338800.889-
chr16678973476789755567897350766.689+
chrX111175481111175687111175683485.845-
chr7104946036104946302104946101344.524+
chr5294704502947066829470452313.904+
chrX149362542149362743149362742259.464-
chr13645678486456811864567849242.283+
chr7149772266149772466149772266191.426+
chr2539396915394003953940037187.112-
chr14762209917622121576220994181.682+
Download the Full Peak List



Motif Analysis

Manual





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