DNA Damage Atlas

GSM2433228-Aire_KO_gH2AX_rep_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5122556, SRR5122557


Source Project ID:   

GSE92597

Cell Type:   

MECs


Organism:   

Mus musculus


Strain:   

C57BL/6


Genotype:   

Aire-/-


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

ChIP-seq (anti-γH2AX)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA41800451994349933.6052/
chrM10800161991349922.255/
chrM06199309919.8352/
rDNA0267991339911.6655/
chr1860800000608405996082029910.4899/
chrX1434828001434831991434829998.73782/
chr51253880001253959991253919997.13541/
chr173425120034353399343022996.72357/
chr51253800001253861991253830996.48803/
chr135859000588259958707996.16069/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA41800451994349933.6052/
chrM10800161991349922.255/
chrM06199309919.8352/
rDNA0267991339911.6655/
chr1860801400608405996082029910.8398/
chrX1434828001434831991434829998.73782/
chrX7659880076599199765988997.65685/
chr51253882001253959991253919997.3184/
chr173425600034353399343022996.99293/
chr125547020055500399554796996.61858/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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