DNA Damage Atlas

GSM2436624-uvrD_XR-seq_exp1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5125163


Source Project ID:   

GSE92734

Organism:   

Escherichia coli


Strain:   

UvrDK33


Treatment:   

UVC


Treatment Dose:   

120J/m2


Genotype:   

uvrD-


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr154213015444841542878447.614/
chr425780342595284258290425.555/
chr447346844752894474046416.281/
chr376545737682793765930406.168/
chr156334515660941565044405.449/
chr364866036501483649650397.361/
chr210115921032482101893396.446/
chr582272584537582549395.127/
chr362884336329123632061390.748/
chr427967942813784280253389.982/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr154223915441111542878478.079/
chr450279145045794503269442.201/
chr421988542210074220567415.282/
chr376547337674533765930405.175/
chr146848614701821469747377.816/
chr435828943594574358708374.036/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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