DNA Damage Atlas

GSM2442931-MCF10AsiSIER_4OHT2h_BLISS_rep3

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR5136788


Source Project ID:   

GSE93038

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

4-Hydroxytamoxifen


Treatment Time:   

2hrs


Treatment Dose:   

300nM


Genotype:   

MCF10A-AsiSIER


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000072


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr6135819349135819352/136/
chrX7278310472783107/136/
chr1875667147566717/102/
chr118537565685375659/68/
chr11997309319973096/68/
chr181932080619320809/68/
chr2208030729208030732/68/
chr36941948769419490/68/
chr5142785051142785054/68/
chr93625851536258518/68/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1753902225390225/121.536/
chr6135819349135819352/96.0959/
chr11997309319973096/85.5846/
chrX7278310472783107/84.3468/
chr93625851536258518/80.4008/
chr5142785051142785054/69.2569/
chr36941948769419490/62.0864/
chr26838475068384753/58.8176/
chr1038263173826320/56.2255/
chr92921280129212804/54.844/
Download the Full Merged Peak List


Visualization

Manual





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