DNA Damage Atlas

GSM2442932-MCF10AsiSIER_NT_BLISS_rep1

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR5136789


Source Project ID:   

GSE93038

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

MCF10A-AsiSIER


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000172


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10118392115118392118/17/
chr1117399432117399435/17/
chr113621366036213663/17/
chr1171358841171358844/17/
chr120633142063317/17/
chr12100579771100579774/17/
chr1226135994226135997/17/
chr15101606568101606571/17/
chr16977691977694/17/
chr194190374441903747/17/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1226135994226135997/29.8151/
Download the Full Merged Peak List


Visualization

Manual





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