DNA Damage Atlas

GSM2442933-MCF10AsiSIER_NT_BLISS_rep2

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR5136790


Source Project ID:   

GSE93038

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

MCF10A-AsiSIER


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000187


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12130388740130388743/85/
chr1141375024137505/43/
chr1151660375151660378/43/
chr117441191674411919/43/
chr121526832152686/43/
chr1226135994226135997/43/
chr13111193040111193043/43/
chr132467301724673020/43/
chr178047287780472880/43/
chr191644789616447899/43/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1226135994226135997/29.8151/
Download the Full Merged Peak List


Visualization

Manual





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