DNA Damage Atlas


GSM2442935-MCF10AsiSIER_4OHT2h_NBS1_rep2_chip




Basic Information

Manual

Sample ID:   

SRR5136792


Source Project ID:   

GSE93038

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

4-Hydroxytamoxifen


Treatment Time:   

300nM


Treatment Dose:   

2hrs


Genotype:   

MCF10A-AsiSIER


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-NBS1)


Others:   

control: GSM2442939-MCF10AsiSIER_INPUT_chip


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr5142785051142785054/2280.56/
chr12121975059121975062/1674.34/
chr24335834043358343/1674.34/
chr1038263173826320/1472.26/
chr175718429857184301/1472.26/
chr35223216452232167/1414.53/
chrX4536639545366398/1327.92/
chr18945859889458601/1270.19/
chr181932080619320809/1241.32/
chr1167790128167790131/1212.45/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr5142785051142785054/1882.23/
chr12121975059121975062/1287.64/
chr24335834043358343/1287.64/
chr175718429857184301/1146.85/
chr181932080619320809/1057.88/
chr72960460829604611/1056.7/
chr35223216452232167/1038.49/
chr1038263173826320/1027.61/
chr69034818890348191/988.083/
chr18945859889458601/953.074/
Download the Full Merged Peak List




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