DNA Damage Atlas


GSM2442936-MCF10AsiSIER_4OHT2h_RAD51_chip




Basic Information

Manual

Sample ID:   

SRR5136793


Source Project ID:   

GSE93038

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

4-Hydroxytamoxifen


Treatment Time:   

300nM


Treatment Dose:   

2hrs


Genotype:   

MCF10A-AsiSIER


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-RAD51)


Others:   

control: GSM2442939-MCF10AsiSIER_INPUT_chip


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1204380454204380457/248.957/
chr223886410338864106/248.957/
chr1753902225390225/207.464/
chr173813747438137477/165.971/
chr18945859889458601/138.31/
chr26838475068384753/138.31/
chr3196594983196594986/138.31/
chr1038263173826320/124.479/
chr11517834015178343/124.479/
chr116366013163660134/124.479/
Download the Full Peak List




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