DNA Damage Atlas


GSM2442938-MCF10AsiSIER_4OHT2h_gH2AX_chip




Basic Information

Manual

Sample ID:   

SRR5136795


Source Project ID:   

GSE93038

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

4-Hydroxytamoxifen


Treatment Time:   

300nM


Treatment Dose:   

2hrs


Genotype:   

MCF10A-AsiSIER


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM2442939-MCF10AsiSIER_INPUT_chip


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1923028792302882/628.719/
chr1224032649224032652/349.288/
chr182970104929701052/349.288/
chr1041716594171662/279.43/
chr12117254247117254250/279.43/
chr176224174962241752/279.43/
chr24345255543452558/279.43/
chr63732181337321816/279.43/
chr7100990979100990982/279.43/
chr9130889409130889412/279.43/
Download the Full Peak List




Copyright © 2023 All Rights Reserved by Wu lab