DNA Damage Atlas

GSM2442948-MCF10AsiSIER_NT_gH2AX_chip

Basic Information Genome Browser Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR5136805


Source Project ID:   

GSE93038

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

MCF10A-AsiSIER


Targeted break:   

AsiSI


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-γH2AX)


Others:   

control: GSM2442939-MCF10AsiSIER_INPUT_chip


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1181073962181073965/210.416/
chr73033510230335105/210.416/
chr10118392115118392118/168.333/
chr51100539111005394/168.333/
chr109368847293688475/126.25/
chr117510876175108764/126.25/
chr12112664925112664928/126.25/
chr12130091882130091885/126.25/
chr133017144530171448/126.25/
chr156681346866813471/126.25/
Download the Full Peak List


Visualization

Manual





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