DNA Damage Atlas

GSM2501560-Chip-seq_of_XRCC1_in_MCF-7_cells_after_10_minutes_of_estradiol_stimulation

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5282040


Source Project ID:   

GSE95302

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

Estradiol


Treatment Time:   

10mins


Treatment Dose:   

10nmol/L


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-XRCC1)


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM0106621326.8938/
rDNA56872564523.3861/
chrUn_gl00021615430715447915439521.0542/
rDNA28419286532855119.7745/
chr9_gl000199_random57084574005716017.8264/
chrUn_gl0002269838917617.4567/
chrM20013993375817.3208/
chrM9684110571028717.2904/
chrUn_gl00022014285614308014300615.9421/
chr9_gl000199_random44227443634429415.9024/
Download the Full Peak List


Visualization

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Motif Analysis

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