DNA Damage Atlas

GSM2501561-Chip-seq_of_PARP1_in_MCF-7_cells_pretreated_with_vehicle_after_30_minutes_of_estradiol_stimulation

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR5282041


Source Project ID:   

GSE95302

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

vehicle + Estradiol


Treatment Time:   

30mins Estradiol


Treatment Dose:   

10nmol/L Estradiol


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-PARP1)


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA57371964536.5299/
chrM9684110461087634.212/
chrM20063983367233.6787/
chrM0105624731.4197/
rDNA16111756168230.1998/
rDNA28452286482855029.7889/
rDNA64526587651827.8624/
rDNA13673143591401623.6511/
chr9_gl000199_random34394345363446422.14/
chrUn_gl00021615431515447115439521.9525/
Download the Full Peak List


Visualization

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Motif Analysis

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