DNA Damage Atlas

GSM2501562-Chip-seq_of_PARP1_in_MCF-7_cells_pretreated_with_FEN1_inhibitor_after_30_minutes_of_estradiol_stimulation

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR5282042


Source Project ID:   

GSE95302

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

FEN1 inhibitor + Estradiol


Treatment Time:   

30mins Estradiol


Treatment Dose:   

10nmol/L Estradiol


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

ChIP-seq (anti-PARP1)


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM0107123130.7917/
chrM16294138277629.8667/
chrM9391117491027527.8616/
rDNA56073364524.1636/
rDNA28444286642853223.9276/
chrUn_gl00021615430215448515439521.1511/
chr9_gl000199_random34379345503446318.1083/
chr9_gl000199_random57072573705715716.2792/
chrUn_gl00022012990613014413001616.2632/
rDNA15991768168216.1849/
Download the Full Peak List


Visualization

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Motif Analysis

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