DNA Damage Atlas

GSM2572682-BLISS_Induced

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR5441980


Source Project ID:   

GSE97589

Cell Type:   

DiVA


Organism:   

Homo sapiens


Treatment:   

4-Hydroxytamoxifen


Treatment Time:   

300nM


Treatment Dose:   

4hrs


Targeted break:   

AsiSI


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000559


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr175718429857184301/135496/
chr26838475068384753/105188/
chr1875667147566717/60022.5/
chr176185085761850860/58239.6/
chr39861816698618169/46948.3/
chr93625851536258518/42788.3/
chr181932080619320809/39222.6/
chr64991758449917587/39222.6/
chr196494479649450/34468.4/
chr66770402267704025/34468.4/
Download the Full Peak List


Visualization

Manual





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