DNA Damage Atlas


GSM2575209-CPD_tXR-seq_rep1




Basic Information

Manual

Sample ID:   

SRR5444675


Source Project ID:   

GSE97675

Cell Type:   

GM12878


Organism:   

Homo sapiens


Treatment:   

UV (254 nm)


Treatment Dose:   

20J/m2


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

tXR-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM7114135310.1915/
rDNA2834328773286064.71887/
rDNA1341914640141754.33525/
rDNA4198842399422853.6491/
chr17_gl000205_random8541289982882423.14666/
chrUn_gl0002205143053805534083.06456/
chr27012944370130452701297672.66678/
chrUn_gl0002243586409939072.66559/
chr149175910791760384917598712.62525/
chr93761770537618128376179482.50276/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM24114135310.3466/
rDNA2844228773286066.13025/
rDNA1342814515141754.86967/
chr149175932691760329917598713.07854/
chr173844398738444592384442212.77062/
chr27012947670130424701297672.74531/
chr11015113651015118731015116512.51816/
chr7_gl000195_random607232472.46171/
rDNA4001040406402072.45062/
chr31850809951850815721850814332.44637/
Download the Full Merged Peak List



Motif Analysis

Manual





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