DNA Damage Atlas

GSM2575209-CPD_tXR-seq_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5444675


Source Project ID:   

GSE97675

Cell Type:   

GM12878


Organism:   

Homo sapiens


Treatment:   

UV (254 nm)


Treatment Dose:   

20J/m2


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

tXR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM7114135310.1915/
rDNA2834328773286064.71887/
rDNA1341914640141754.33525/
rDNA4198842399422853.6491/
chr17_gl000205_random8541289982882423.14666/
chrUn_gl0002205143053805534083.06456/
chr27012944370130452701297672.66678/
chrUn_gl0002243586409939072.66559/
chr149175910791760384917598712.62525/
chr93761770537618128376179482.50276/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM24114135310.3466/
rDNA2844228773286066.13025/
rDNA1342814515141754.86967/
chr149175932691760329917598713.07854/
chr173844398738444592384442212.77062/
chr27012947670130424701297672.74531/
chr11015113651015118731015116512.51816/
chr7_gl000195_random607232472.46171/
rDNA4001040406402072.45062/
chr31850809951850815721850814332.44637/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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