Sample Detail

DNA Damage Atlas

GSM2575211-BPDE-dG_tXR-seq_rep1

Basic Information

Manual

Sample ID:

SRR5444677

Source Project ID:

Cell Type:

GM12878

Organism:

Homo sapiens

Treatment:

BPDE

Treatment Dose:

2uM

Layout:

SINGLE

Instrument model:

Illumina HiSeq 2500

Technique:

tXR-seq

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Chromosome	Start	End	Summit	Intensity	Strand
chr4	79919024	79919063	79919042	58.4124	/
chrM	425	634	504	44.8108	/
chr2	203498551	203498586	203498567	43.392	/
chrM	245	415	302	40.9459	/
chrM	14244	14477	14388	39.6519	/
chr11	131544082	131544124	131544102	39.1734	/
chr2	74408910	74408977	74408938	38.7236	/
chrM	10821	11013	10977	37.9021	/
chr18	19320514	19320571	19320544	37.746	/
chrUn_gl000220	119852	119902	119876	36.7024	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr4	79919024	79919063	79919042	58.4124	/
chrM	425	634	504	44.8108	/
chr2	203498551	203498586	203498567	43.392	/
chrM	245	415	302	40.9459	/
rDNA	12689	12725	12701	40.4289	/
chrM	14244	14477	14388	39.6519	/
chr11	131544082	131544124	131544102	39.1734	/
chr2	74408910	74408977	74408938	38.7236	/
chr18	19320514	19320571	19320544	37.746	/
chr7	101915703	101915759	101915734	37.29	/

Download the Full Merged Peak List

Visualization

Manual

Download the matrix file

Motif Analysis

Manual

Download

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