DNA Damage Atlas

GSM2575213-NHF1_CPD_XR-seq_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR5444679,SRR5444680


Source Project ID:   

GSE97675

Cell Type:   

NHF1


Organism:   

Homo sapiens


Treatment:   

UV (254 nm)


Treatment Dose:   

20J/m2


Harvested Time:   

time between uv exposure and harvesting: 1h


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2000


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random93321934549338628.9082/
chr1210908516410908582110908528420.9002/
chr1569707172697075816970736820.1439/
chr741995493419958934199561419.6817/
chr317080718517080753717080728717.6844/
chr1775774497577628757753717.388/
chr217552825817552869617552854916.7201/
chr1166391619663918966639175416.524/
chr1578300311783005777830039916.519/
chr2036849036862336855516.519/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr937617892376180513761796821.8781/
chr1210908516410908582110908528420.9002/
chr1185430013854304388543012420.6779/
chr1569707172697075816970736820.1439/
chr741995499419958934199561419.9814/
chr1288150648815515881529519.0799/
chr724882674248827942488275718.3085/
chr123510591423510619923510603317.9873/
chr1956151933561521505615204417.7179/
chr2242196649421968254219674517.6844/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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