DNA Damage Atlas


GSM2585691-NHF1_CPD_10J_8h_A




Basic Information

Manual

Sample ID:   

SRR5461435


Source Project ID:   

GSE98025

Cell Type:   

NFH1


Organism:   

Homo sapiens


Treatment:   

UV (254 nm)


Treatment Time:   

10s


Treatment Dose:   

1J/m2/s


Harvested Time:   

8h


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

HS-Damage-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002225874159667590821.58112+
chr28430924984309887843092901.53923+
chr161843503818435919184354551.52001+
chr11042504521042514751042508311.51846+
chr93909185039093603390930861.51763+
chr204742849447429035474287931.48517-
chr22107805932107813032107808431.48373-
chr161846596618466440184660111.46909+
chr12314367192314378242314369281.45426+
chr211092503710927273109262711.43735-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr93909185039093487390930861.68744+
chrUn_gl0002225874159667590821.66824+
chr22430505802430514062430508331.62996+
chr219416163941826294166761.55789+
chr163239380232394684323941531.50974+
chr23611243628973625561.50151-
chr11042504521042514751042508311.47618+
chr163240543432408941324082491.46223+
chr89271093692711671927110721.43534+
chr114278545427917142788531.43171+
Download the Full Merged Peak List



Motif Analysis

Manual





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